Journal Figure Replication | Plotting SHAP Interaction Matrix Heatmaps with Python

📰 Medium · Data Science

Learn to plot SHAP interaction matrix heatmaps with Python to visualize feature interactions in machine learning models

intermediate Published 19 Jun 2026

Action Steps

Import necessary libraries such as SHAP and matplotlib
Load your machine learning model and data
Calculate SHAP values for your model
Create a SHAP interaction matrix
Plot the interaction matrix as a heatmap using matplotlib

Who Needs to Know This

Data scientists and machine learning engineers can benefit from this tutorial to improve their model interpretability and feature analysis skills

Key Insight

💡 SHAP interaction matrix heatmaps can help identify complex relationships between features in machine learning models

Key Takeaways

Learn to plot SHAP interaction matrix heatmaps with Python to visualize feature interactions in machine learning models

Full Article

Title: Journal Figure Replication | Plotting SHAP Interaction Matrix Heatmaps with Python

URL Source: https://medium.com/top-python-libraries/journal-figure-replication-plotting-shap-interaction-matrix-heatmaps-with-python-f3998a443c7e?source=rss------data_science-5

Published Time: 2026-06-19T00:46:25Z

Markdown Content:
# Journal Figure Replication | Plotting SHAP Interaction Matrix Heatmaps with Python | by ZHEMING XU | Top Python Libraries | Jun, 2026 | Medium

[Sitemap](https://medium.com/sitemap/sitemap.xml)

[Open in app](https://play.google.com/store/apps/details?id=com.medium.reader&referrer=utm_source%3DmobileNavBar&source=post_page---top_nav_layout_nav-----------------------------------------)

Sign up

[Sign in](https://medium.com/m/signin?operation=login&redirect=https%3A%2F%2Fmedium.com%2Ftop-python-libraries%2Fjournal-figure-replication-plotting-shap-interaction-matrix-heatmaps-with-python-f3998a443c7e&source=post_page---top_nav_layout_nav-----------------------global_nav------------------)

[](https://medium.com/?source=post_page---top_nav_layout_nav-----------------------------------------)

Get app

[Write](https://medium.com/m/signin?operation=register&redirect=https%3A%2F%2Fmedium.com%2Fnew-story&source=---top_nav_layout_nav-----------------------new_post_topnav------------------)

[Search](https://medium.com/search?source=post_page---top_nav_layout_nav-----------------------------------------)

Sign up

[Sign in](https://medium.com/m/signin?operation=login&redirect=https%3A%2F%2Fmedium.com%2Ftop-python-libraries%2Fjournal-figure-replication-plotting-shap-interaction-matrix-heatmaps-with-python-f3998a443c7e&source=post_page---top_nav_layout_nav-----------------------global_nav------------------)

![Image 1: Unknown user](https://miro.medium.com/v2/resize:fill:64:64/1*dmbNkD5D-u45r44go_cf0g.png)

## [Top Python Libraries](https://medium.com/top-python-libraries?source=post_page---publication_nav-d565f18bf45f-f3998a443c7e---------------------------------------)

·
Follow publication

[![Image 2: Top Python Libraries](https://miro.medium.com/v2/resize:fill:76:76/1*d3JXV6YjxMmjIYTctmmdqQ.png)](https://medium.com/top-python-libraries?source=post_page---post_publication_sidebar-d565f18bf45f-f3998a443c7e---------------------------------------)
Python is widely used in fields such as data analysis, machine learning, and web development. Sharing these skills will help you advance further in your career.[https://join.slack.com/t/aidisruptiont-9307882/shared_invite/zt-2vb2pzkqq-oTJmcTR_v0AWgJ31ZPfOGA](https://join.slack.com/t/aidisruptiont-9307882/shared_invite/zt-2vb2pzkqq-oTJmcTR_v0AWgJ31ZPfOGA)

Follow publication

Member-only story

# Journal Figure Replication | Plotting SHAP Interaction Matrix Heatmaps with Python

[![Image 3: ZHEMING XU](https://miro.medium.com/v2/da:true/resize:fill:64:64/0*lruYLpycBrgbUnrZ)](https://medium.com/@benjamin_hui?source=post_page---byline--f3998a443c7e---------------------------------------)

[ZHEMING XU](https://medium.com/@benjamin_hui?source=post_page---byline--f3998a443c7e---------------------------------------)

Follow

13 min read

·

Just now

[](https://medium.com/m/signin?actionUrl=https%3A%2F%2Fmedium.com%2F_%2Fvote%2Ftop-python-libraries%2Ff3998a443c7e&operation=register&redirect=https%3A%2F%2Fmedium.com%2Ftop-python-libraries%2Fjournal-figure-replication-plotting-shap-interaction-matrix-heatmaps-with-python-f3998a443c7e&user=ZHEMING+XU&userId=67f08c5e198e&source=---header_actions--f3998a443c7e---------------------clap_footer------------------)

[](https://medium.com/m/signin?actionUrl=https%3A%2F%2Fmedium.com%2F_%2Frepost%2Fp%2Ff3998a443c7e&operation=register&redirect=https%3A%2F%2Fmedium.com%2Ftop-python-libraries%2Fjournal-figure-replication-plotting-shap-interaction-matrix-heatmaps-with-python-f3998a443c7e&user=ZHEMING+XU&userId=67f08c5e198e&source=---header_actions--f3998a443c7e---------------------repost_header------------------)

[](https://medium.com/m/signin?ac

Read full article → ← Back to Reads

Journal Figure Replication | Plotting SHAP Interaction Matrix Heatmaps with Python

Key Takeaways

Full Article

Related Videos